Joseph D. Yesselman: search on Z-Library

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1

Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures

Kappel, Kalli, Zhang, Kaiming, Su, Zhaoming, Watkins, Andrew M., Kladwang, Wipapat, Li, Shanshan, Pintilie, Grigore, Topkar, Ved V., Rangan, Ramya, Zheludev, Ivan N., Yesselman, Joseph D., Chiu, Wah,

Journal:

Year:

2020

File:

PDF, 11.87 MB

2020

2

High-Throughput Investigation of Diverse Junction Elements in RNA Tertiary Folding

Denny, Sarah Knight, Bisaria, Namita, Yesselman, Joseph David, Das, Rhiju, Herschlag, Daniel, Greenleaf, William James

Journal:

Year:

2018

Language:

english

File:

PDF, 9.33 MB

english, 2018

3

Assessing the quality of absolute hydration free energies among CHARMM-compatible ligand parameterization schemes

Knight, Jennifer L., Yesselman, Joseph D., Brooks, Charles L.

Journal:

Journal of Computational Chemistry

Year:

2013

Language:

english

File:

PDF, 754 KB

english, 2013

4

Predicting extreme pKa shifts in staphylococcal nuclease mutants with constant pH molecular dynamics

Evan J. Arthur, Joseph D. Yesselman, Charles L. Brooks III

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 340 KB

english, 2011

5

Conservation and Functional Importance of Carbon–Oxygen Hydrogen Bonding in AdoMet-Dependent Methyltransferases

Horowitz, Scott, Dirk, Lynnette M.A., Yesselman, Joseph D., Nimtz, Jennifer S., Adhikari, Upendra, Mehl, Ryan A., Scheiner, Steve, Houtz, Robert L., Al-Hashimi, Hashim M., Trievel, Raymond C.

Journal:

Journal of the American Chemical Society

Year:

2013

Language:

english

File:

PDF, 2.75 MB

english, 2013

6

RNA-Redesign: a web server for fixed-backbone 3D design of RNA: Figure 1.

Yesselman, Joseph D., Das, Rhiju

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.90 MB

english, 2015

7

RNA structure inference through chemical mapping after accidental or intentional mutations

Cheng, Clarence Y., Kladwang, Wipapat, Yesselman, Joseph D., Das, Rhiju

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.43 MB

english, 2017

8

Sequence-dependent RNA helix conformational preferences predictably impact tertiary structure formation

Yesselman, Joseph D., Denny, Sarah K., Bisaria, Namita, Herschlag, Daniel, Greenleaf, William J., Das, Rhiju

Journal:

Proceedings of the National Academy of Sciences

Year:

2019

File:

PDF, 12.89 MB

2019

9

Computational design of three-dimensional RNA structure and function

Yesselman, Joseph D., Eiler, Daniel, Carlson, Erik D., Gotrik, Michael R., d’Aquino, Anne E., Ooms, Alexandra N., Kladwang, Wipapat, Carlson, Paul D., Shi, Xuesong, Costantino, David A., Herschlag, Da

Journal:

Nature Nanotechnology

Year:

2019

File:

PDF, 3.08 MB

2019

10

MATCH: An atom-typing toolset for molecular mechanics force fields

Joseph D. Yesselman, Daniel J. Price, Jennifer L. Knight, Charles L. Brooks III

Journal:

Journal of Computational Chemistry

Year:

2012

Language:

english

File:

PDF, 857 KB

english, 2012

11

Exploring RNA Drug Binding Using Consistent Charge Models

Yesselman, Joseph D., Al-Hashimi, Hashim M., Brooks, Charles L.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 34 KB

english, 2011

12

Primerize: automated primer assembly for transcribing non-coding RNA domains

Tian, Siqi, Yesselman, Joseph D., Cordero, Pablo, Das, Rhiju

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.91 MB

english, 2015

13

High Throughput Characterization of RNA Tertiary Elements

Denny, Sarah, Bisaria, Namita, Yesselman, Joseph, Das, Rhiju, Herschlag, Daniel, Greenleaf, William

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 41 KB

english, 2016

14

Updates to the RNA mapping database (RMDB), version 2

Yesselman, Joseph D, Tian, Siqi, Liu, Xin, Shi, Lei, Li, Jin Billy, Das, Rhiju

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 2.10 MB

english, 2018

15

Frequent side chain methyl carbon-oxygen hydrogen bonding in proteins revealed by computational and stereochemical analysis of neutron structures

Yesselman, Joseph D., Horowitz, Scott, Brooks, Charles L., Trievel, Raymond C.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2015

Language:

english

File:

PDF, 330 KB

english, 2015

16

Rapid and accurate determination of atomistic RNA dynamic ensemble models using NMR and structure prediction

Shi, Honglue, Rangadurai, Atul, Abou Assi, Hala, Roy, Rohit, Case, David A., Herschlag, Daniel, Yesselman, Joseph D., Al-Hashimi, Hashim M.

Journal:

Nature Communications

Year:

2020

File:

PDF, 2.87 MB

2020

17

Structural conservation in the template/pseudoknot domain of vertebrate telomerase RNA from teleost fish to human

Wang, Yaqiang, Yesselman, Joseph D., Zhang, Qi, Kang, Mijeong, Feigon, Juli

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 2.24 MB

english, 2016

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